#PBS -S /bin/ksh
#PBS -N prk-15003
#PBS -q @chapman
#PBS -l ncpus=1
#PBS -l mem=50mb
#PBS -l walltime=24:00:00
#PBS -m e
#PBS -o out/stdout_of_script.chapman.15003
#PBS -j oe

# The default for the environmental variable OMP_NUM_THREADS
# is set at 1. If you want it to be same as $NCPUS,
# you have to set it explicitly.

# setenv OMP_NUM_THREADS 16
# export OMP_NUM_THREADS=16

# By default, PBS executes your job from your home directory.
# However, you can use the environment variable
# PBS_O_WORKDIR to change to the directory where
# you submitted your job.
# in the case below, I have copied all my files to 

cd /scratch1/tullis/
# now remove items in scratch (and check that) so left over 
#  ones won't cause problems for opening files that are 'new'
rm -r in out park * *.*
ls -lt
mkdir in
mkdir out
hostname
pwd

scp turing:/u/tullis/BaselineMilestone/in/run.prk.15003 run.prk.15003
scp turing:/u/tullis/BaselineMilestone/in/prk.input.15003 in
scp turing:/u/tullis/BaselineMilestone/in/prk.dat.15003 in
scp turing:/u/tullis/BaselineMilestone/src-bin/park park
ls -lt

time ./park < run.prk.15003 > out/std_output_of_run.15003

# copy output files back to turing

scp -r out turing:/u/tullis/BaselineMilestone

# -end of script-