#PBS -S /bin/ksh
#PBS -N prk-chap.150003
#PBS -q special@chapman
#PBS -l ncpus=256
#PBS -l mem=2000mb
#PBS -l walltime=12:00:00
#PBS -m e
#PBS -o output.150003
#PBS -j oe

# The default for the environmental variable OMP_NUM_THREADS
# is set at 1. If you want it to be same as $NCPUS,
# you have to set it explicitly.

# setenv OMP_NUM_THREADS 16
# export OMP_NUM_THREADS=16

# By default, PBS executes your job from your home directory.
# However, you can use the environment variable
# PBS_O_WORKDIR to change to the directory where
# you submitted your job.
# in the case below, I have copied all my files to nobackup1


rm /cluster/chapman/nobackup1/nbeeler/testing.txt
rm /cluster/chapman/nobackup1/nbeeler/dbg
rm /cluster/chapman/nobackup1/nbeeler/park
rm /cluster/chapman/nobackup1/nbeeler/run.pr*
rm -r /cluster/chapman/nobackup1/nbeeler/out
rm -r /cluster/chapman/nobackup1/nbeeler/in
cd /nobackup1/nbeeler/
ls -lt
mkdir in
mkdir out
hostname
pwd

scp turing:/u/nbeeler/1st_Code_Improv_Milestone/in/run.prk.150003 run.prk.150003
scp turing:/u/nbeeler/1st_Code_Improv_Milestone/in/prk.input.150003 in
scp turing:/u/nbeeler/1st_Code_Improv_Milestone/in/prk.dat.150003new in
scp turing:/u/nbeeler/1st_Code_Improv_Milestone/src-bin/park park
ls -lt

time mpirun -np 256  ./park < run.prk.150003 > out/std_output_of_run.150003

# copy output files back to start directory on chapman

scp -r out /u/nbeeler

# -end of script-